I still remember the first time my youngest bit into a whoopie pie. Her eyes went wide, and she declared it the best thing ever. But soon after, we learned she needed to eat gluten-free.
My heart sank a little. How could I recreate that same joy? After many tries, I finally nailed these gluten-free whoopie pies.
They are soft, chocolatey, and filled with a fluffy marshmallow cream. Now, gluten-free whoopie pies are a staple in our home. Every time I bake a batch, I feel like I’m wrapping my family in a warm hug.
These gluten-free whoopie pies bring smiles without any gluten worries. Let me show you how simple they are to make.
WHY YOU’LL LOVE THESE GLUTEN-FREE WHOOPIE PIES
You will love these gluten-free whoopie pies because they taste just like the classic. Moreover, they are incredibly easy to make. Plus, they use simple pantry staples.
Consequently, you can whip up a batch any day. These gluten-free whoopie pies are perfect for lunchboxes, potlucks, or a cozy night in. Above all, they prove that gluten-free whoopie pies can be just as indulgent and delicious.
INGREDIENTS YOU’LL NEED

For the cakes, you need gluten-free flour blend, cocoa powder, baking soda, salt, butter, brown sugar, an egg, buttermilk, and vanilla. For the filling, you need marshmallow fluff, shortening, powdered sugar, and vanilla. These ingredients make the best gluten-free whoopie pies.
| Ingredient | Amount |
|---|---|
| Gluten-free flour blend | 2 cups |
| Unsweetened cocoa powder | 1/2 cup |
| Baking soda | 1 tsp |
| Salt | 1/2 tsp |
| Butter, softened | 1/2 cup |
| Brown sugar | 1 cup |
| Egg | 1 large |
| Buttermilk | 1 cup |
| Vanilla extract | 1 tsp |
| Marshmallow fluff | 1 cup |
| Shortening | 1/2 cup |
| Powdered sugar | 1 cup |
| Vanilla extract (filling) | 1 tsp |
SUBSTITUTIONS & VARIATIONS
If you don’t have buttermilk, simply add a tablespoon of lemon juice to regular milk. For a dairy-free version, use plant butter and almond milk. To make these gluten-free whoopie pies extra special, add a teaspoon of peppermint extract to the filling.
You can also swap the chocolate cakes for vanilla. The possibilities are endless with gluten-free whoopie pies.
STEP-BY-STEP INSTRUCTIONS
- First, preheat your oven to 350°F and line two baking sheets with parchment. In a bowl, whisk the flour, cocoa, baking soda, and salt. In another bowl, beat the butter and sugar until fluffy.
- Then add the egg and vanilla. Next, alternate adding the dry mix and buttermilk. Scoop tablespoon-sized rounds onto the sheets.
- Bake for 10-12 minutes. Let them cool completely. Meanwhile, beat the filling ingredients until smooth.
- Finally, sandwich the cooled cakes with the filling. Your gluten-free whoopie pies are ready!
PRO TIPS FOR SUCCESS

Use a cookie scoop for even cakes. Don’t overmix the batter. Chill the filled gluten-free whoopie pies for 30 minutes before serving.
This helps them set. Also, let the cakes cool fully before filling. Otherwise, the filling will melt. These tips guarantee perfect gluten-free whoopie pies every time.
STORAGE & REHEATING TIPS
Store gluten-free whoopie pies in an airtight container in the fridge for up to five days. You can also freeze them for up to three months. To enjoy, simply thaw at room temperature.
No reheating needed. These gluten-free whoopie pies taste great cold or at room temp.
WHAT TO SERVE WITH THIS RECIPE

Serve gluten-free whoopie pies with a cold glass of milk. They also pair beautifully with coffee or tea. For a party, offer them alongside fresh fruit.
Kids love them with a scoop of vanilla ice cream. Truly, gluten-free whoopie pies are a versatile treat.
FAQS
Are whoopie pies gluten-free?
No, traditional whoopie pies are made with standard wheat flour. However, many specialty bakeries offer gluten-free versions made with alternative flour blends.
Does Trader Joe’s have gluten-free pie?
Yes, Trader Joe’s occasionally offers seasonal gluten-free pie crusts and select gluten-free dessert pies (such as pumpkin or fruit options around the holidays). Availability varies by season and location.
What is the filling in whoopie pies made of?
Traditional whoopie pie filling is a sweet, fluffy cream made primarily of marshmallow fluff (or marshmallow creme), vegetable shortening or butter, and powdered sugar.
Where can I buy gluten-free pies online?
You can order fresh or frozen gluten-free pies online from specialty bakeries like Maine Pie Co., Gimme Gluten Free, Raised Gluten Free, or through gourmet food marketplaces like Goldbelly.
NUTRITION INFORMATION (PER SERVING)
| Nutrient | Amount |
|---|---|
| Calories | 220 |
| Total Fat | 10g |
| Saturated Fat | 4g |
| Cholesterol | 25mg |
| Sodium | 150mg |
| Total Carbohydrates | 32g |
| Sugars | 20g |
| Protein | 2g |
Each bite of these gluten-free whoopie pies is pure comfort. So go ahead, bake a batch today. Your family will thank you. And remember, gluten-free whoopie pies are always made with love.
Print
gluten-free whoopie pies
- Total Time: 27 minutes
- Yield: 12 whoopie pies 1x
- Diet: Gluten-free
Description
Gluten-free whoopie pies with soft chocolate cakes and fluffy marshmallow cream filling. Easy to make and perfect for any occasion.
Ingredients
- For the cakes: 2 cups gluten-free flour blend
- 1/2 cup unsweetened cocoa powder
- 1 tsp baking soda
- 1/2 tsp salt
- 1/2 cup butter, softened
- 1 cup brown sugar
- 1 large egg
- 1 cup buttermilk
- 1 tsp vanilla extract
- For the filling: 1 cup marshmallow fluff
- 1/2 cup shortening
- 1 cup powdered sugar
- 1 tsp vanilla extract
Instructions
- 1. 1. Preheat oven to 350°F and line two baking sheets with parchment paper.
- 2. 2. In a bowl, whisk together flour, cocoa, baking soda, and salt.
- 3. 3. In another bowl, beat butter and brown sugar until fluffy.
- 4. 4. Add egg and vanilla, beat well.
- 5. 5. Alternately add dry ingredients and buttermilk, mixing until just combined.
- 6. 6. Scoop tablespoon-sized rounds onto baking sheets.
- 7. 7. Bake for 10-12 minutes.
- 8. 8. Let cool completely.
- 9. 9. Meanwhile, beat filling ingredients until smooth.
- 10. 10. Sandwich cooled cakes with filling.
Notes
For buttermilk substitute: add 1 tbsp lemon juice to regular milk.
Dairy-free: use plant butter and almond milk.
Add 1 tsp peppermint extract to filling for variation.
Use a cookie scoop for even cakes.
Don’t overmix batter.
Chill filled whoopie pies for 30 minutes before serving.
Store in airtight container in fridge up to 5 days or freeze up to 3 months.
- Prep Time: 15 minutes
- Cook Time: 12 minutes
- Category: Dessert
- Method: Baking
- Cuisine: American
Nutrition
- Serving Size: 1 whoopie pie
- Calories: 220
- Sugar: 20g
- Sodium: 150mg
- Fat: 10g
- Saturated Fat: 4g
- Unsaturated Fat: 6g
- Trans Fat: 0g
- Carbohydrates: 32g
- Fiber: 1g
- Protein: 2g
- Cholesterol: 25mg
Keywords: gluten-free, whoopie pies, chocolate, marshmallow, dessert